A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.
References
Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.
See also
Other Transcriptomics data:
volcano_example.df
Examples
colnames(quadrant_example.df)
#> [1] "tag" "gene" "outcome.x" "outcome.y" "logFC.x" "logFC.y"
#> [7] "genotype"
head(quadrant_example.df)
#> tag gene outcome.x outcome.y logFC.x logFC.y genotype
#> 1 AT5G11060 TIC56 0 0 -0.17685517 -0.32956762 Ler
#> 2 AT3G01280 ATWRKY48 0 0 -0.06471884 0.07771315 Ler
#> 3 AT5G06320 ANY1 0 0 -0.35200684 -0.04331339 Ler
#> 4 AT1G05850 AP1M1 0 0 -0.40284744 -0.04505435 Ler
#> 5 AT2G22300 HSA32 0 0 -0.34482142 -0.11185095 Ler
#> 6 AT2G16070 UBQ11 0 0 -0.22328946 -0.23210780 Ler