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A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.

Usage

quadrant_example.df

Format

A data.frame object with 6088 rows and 6 variables

References

Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.

See also

Other Transcriptomics data: volcano_example.df

Examples

colnames(quadrant_example.df)
#> [1] "tag"       "gene"      "outcome.x" "outcome.y" "logFC.x"   "logFC.y"  
#> [7] "genotype" 
head(quadrant_example.df)
#>         tag     gene outcome.x outcome.y     logFC.x     logFC.y genotype
#> 1 AT5G11060    TIC56         0         0 -0.17685517 -0.32956762      Ler
#> 2 AT3G01280 ATWRKY48         0         0 -0.06471884  0.07771315      Ler
#> 3 AT5G06320     ANY1         0         0 -0.35200684 -0.04331339      Ler
#> 4 AT1G05850    AP1M1         0         0 -0.40284744 -0.04505435      Ler
#> 5 AT2G22300    HSA32         0         0 -0.34482142 -0.11185095      Ler
#> 6 AT2G16070    UBQ11         0         0 -0.22328946 -0.23210780      Ler