A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.
References
Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.
See also
Other Transcriptomics data:
quadrant_example.df
Examples
colnames(volcano_example.df)
#> [1] "tag" "gene" "outcome" "logFC" "PValue" "genotype"
head(volcano_example.df)
#> tag gene outcome logFC PValue genotype
#> 1 AT1G01040 ASU1 0 -0.15284466 0.35266997 Ler
#> 2 AT1G01290 ASG4 0 -0.30057068 0.05471732 Ler
#> 3 AT1G01560 ATSBT1.1 0 -0.57783350 0.06681310 Ler
#> 4 AT1G01790 AtSAM1 0 -0.04729662 0.74054263 Ler
#> 5 AT1G02130 AtTRM82 0 -0.14279891 0.29597519 Ler
#> 6 AT1G02560 PRP39 0 0.23320752 0.07487043 Ler