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A dataset containing reshaped and simplified output from an analysis of data from RNAseq done with package edgeR. Original data from gene expression in the plant species Arabidopsis thaliana.

Usage

volcano_example.df

Format

A data.frame object with 1218 rows and 5 variables

References

Rai, Neha; O'Hara, Andrew; Farkas, Daniel; Safronov, Omid; Ratanasopa, Khuanpiroon; Wang, Fang; Lindfors, Anders V.; Jenkins, Gareth I.; Lehto, Tarja; Salojärvi, Jarkko; Brosché, Mikael; Strid. Åke; Aphalo, Pedro José; Morales, Luis Orlando (2020) The photoreceptor UVR8 mediates the perception of both UV-B and UV-A wavelengths up to 350 nm of sunlight with responsivity moderated by cryptochromes. Plant, Cell & Environment, 43:1513-1527.

See also

Other Transcriptomics data: quadrant_example.df

Examples

colnames(volcano_example.df)
#> [1] "tag"      "gene"     "outcome"  "logFC"    "PValue"   "genotype"
head(volcano_example.df)
#>         tag     gene outcome       logFC     PValue genotype
#> 1 AT1G01040     ASU1       0 -0.15284466 0.35266997      Ler
#> 2 AT1G01290     ASG4       0 -0.30057068 0.05471732      Ler
#> 3 AT1G01560 ATSBT1.1       0 -0.57783350 0.06681310      Ler
#> 4 AT1G01790   AtSAM1       0 -0.04729662 0.74054263      Ler
#> 5 AT1G02130  AtTRM82       0 -0.14279891 0.29597519      Ler
#> 6 AT1G02560    PRP39       0  0.23320752 0.07487043      Ler