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Replace "good" data from pixels adjacent to NAs with NAs as data from pixels not saturated but located in the neighbourhood of saturated pixels can return unreliable data. This correction is needed by a phenomenon similar to "blooming" in camera sensors whereby when a sensor well gets saturated some of the charge migrates to adjacent wells in the detector increasing their readings.

Usage

bleed_nas(x, n = 10)

Arguments

x

raw_spct object

n

integer Number of pixels to set to NAs.

Value

a copy of x with values replaced by NAs as needed in all counts columns present.

Note

Avoid using very large n values as n pixels at each end of the array are assumed not to be ever saturated. The value of n needed for each detector type/instrument needs to be found through testing. As rule of thumb use 5 < n < 10 for Sony's ILxxx and 8 < n < 14 for Hamamatsu xxxx. At the moment we use a symmetric window although "blooming" could be asymmetric.