Package index • ooacquire

Package overview

ooacquire ooacquire-package: ooacquire: Acquire Data from OO Spectrometers

Data acquisition from spectrometers

Interactive data acquisition

Functions for direct acquisition of spectral data from array spectrometers.

acq_irrad_interactive(): Acquire spectral irradiance or spectral fluence

acq_fraction_interactive(): Acquire spectral fraction

plot_spct_file(): Read a file and plot spectrum

collect_spct_files(): Collect spectra into a collection

Interactive utility functions

Functions useful for development of user defined interactive functions. Used for the implementation of the functions in the previous section.

choose_ch_interactive(): Interactively select a channel

list_srs_interactive(): Get list of connected instruments

choose_sr_interactive(): Interactively select an instrument

protocol_interactive(): Interactively select a measurement protocol

set_attributes_interactive(): Interactively set user attributes

set_folder_interactive(): Interactively get folder to use

set_seq_interactive(): Interactively set sequential measurements

tune_interactive(): Interactively adjust the integration time settings

f.trigger.message(): Manual trigger request

set_session_name_interactive(): Interactively get session name to set

set_user_name_interactive(): Interactively get user name to set

Low level functions

Low level functions useful for development of both of user defined scripts and interactive functions.

start_session(): Connect to Maya spectrometer

end_session(): Disconnect from spectrometer

list_instruments(): List connected spectrometers

get_oo_descriptor(): Get the instrument description and EEPROM data

set_descriptor_wl(): Replace wavelength values in an instrument description

set_descriptor_bad_pixs() update_spct_bad_pixs() update_mspct_bad_pixs(): Add bad pixel information to an instrument description

set_descriptor_nl(): Replace linearization function in instrument description.

set_descriptor_irrad_mult(): Add spectral irradiance calibration

set_descriptor_integ_time(): Replace integration time limits in instrument descriptor

set_descriptor_entrance_optics(): Add or replace entrance optics data to descriptor

get_oo_settings(): Get the current values of instrument settings

acq_settings() tune_acq_settings(): Settings for spectral measurement

acq_raw_spct(): Measure one raw spectrum

acq_raw_mspct(): Take one set of spectral readings

hs_acq_raw_mspct(): Acquire spectra at high speed

check_sn_match(): Check consistency of serial number

QC_dark(): Quality control of dark spectra

rm_jwrapper(): Remove java wrapper from descriptor

update_bad_pixs(): Update bad-pixels in instrument descriptor

Data import from text files

Read data

Functions for reading raw-counts and metadata from output files from OceanView, SpectraSuite, Raspberry Pi software and the inbuilt-firmware of the Jaz modular spectrometer.

read_oo_data(): Read Files Saved by Ocean Optics' instruments or software.

read_oo_ssdata(): Read File Saved by Ocean Optics' SpectraSuite.

read_oo_ovdata(): Read File Saved by Ocean Optics' OceanView.

read_oo_pidata(): Read File Saved by Ocean Optics' Raspberry Pi software.

read_oo_caldata(): Read OO irradiance calibration.

read_files2mspct(): Read multiple files into raw_mspct object

Utility functions

Utility functions for reading raw-counts and metadata from output files from OceanView, SpectraSuite, Raspberry Pi software and the inbuilt-firmware of the Jaz modular spectrometer.