Functions to acquire data directly from Ocean Optics spectrometers, and functions to read similar data from files. Functions to convert raw-counts into counts-per-second and physical quantities. Data are saved in objects of classes defined in package 'photobiology'. The instrument settings, instrument description, date-time of acquisition and optionally goecode are stored as attributes.
Details
Processing of raw-counts data acquired following different protocols and corrections including integration-time bracketing and merging, slit function corrections, subtraction of stray light and adaptive smoothing corrections.
Acquisition of raw-counts spectra directly from Ocean Optics' spectrometers. A high level interface to the OmniDriver library for spectrometer control and data acquisition provided by Ocean Optics for their instruments. Built on top of the 'rOmniDriver' package which provides a very thin wrapper on the Java functions giving access to the proprietary driver.
Reading of raw-counts spectra from files saved by Ocean Optics' software: OceanView, SpectraSuite, Raspberry Pi SDK, and Jaz firmware.
Note
This package is provided without any warranty of suitability for any specific purpose or instrument as it has been tested with only three different models of Ocean Optics spectrometers, each with one or two of many available hardware configurations.
Author
Maintainer: Pedro J. Aphalo pedro.aphalo@helsinki.fi [translator]
Authors:
Lasse Ylianttila
Other contributors:
Titta K. Kotilainen [contributor]