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Package overview

photobiologyInOut photobiologyInOut-package
photobiologyInOut: Read Spectral and Logged Data from Foreign Files

Spectrometer output files

Read files with data from spectrometers.

read_oo_ssirrad() read_oo_ssdata()
Read File Saved by Ocean Optics' SpectraSuite.
read_oo_jazirrad() read_oo_jazpc() read_oo_jazdata()
Read Files Saved by Ocean Optics' Jaz spectrometer.
read_oo_pidata()
Read File Saved by Ocean Optics' Raspberry Pi software.
read_avaspec_csv() read_avaspec_xls()
Read '.csv' File Saved by Avantes' Software for AvaSpec.
read_macam_dta()
Read '.DTA' File Saved by Macam's Software.
read_licor_prn() read_m_licor_prn()
Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.
read_li180_txt() read_m_li180_txt()
Read '.TXT' File(s) Saved by LI-COR's LI-180 spectroradiometer.
read_wasatch_csv()
Read File Saved by Wasatch's Enlighten.
read_spectrapen_csv()
Read '.CSV' File Saved by PSI's Software.
read_cid_spectravue_csv()
Read File Saved by CID's SpectraVue.

Spectral data from radiation transfer models

Read files with data from radiation transfer models.

read_fmi_cum() read_m_fmi_cum()
Read daily cummulated solar spectrum data file(s).
read_fmi2mspct()
Read multiple solar spectra from a data file.
read_tuv_usrout() read_tuv_usrout2mspct()
Read TUV output file.
read_qtuv_txt()
Read Quick TUV output file.
read_uvspec_disort()
Read libRadtran's uvspec output file.
read_uvspec_disort_vesa()
Read libRadtran's uvspec output file from batch job.

Spectral data from public repositories

Read files with data downloaded from public repositories.

read_FReD_csv()
Read '.CSV' FReD database.
read_ASTER_txt()
Read File downloaded from ASTER data base.

Spectral data to and from other R packages

Read and write to objects belonging to classes defined in other R packages.

Wrappers on functions from other R packages

Call functions from package ‘colorSpec’ with on-the-fly conversion of spectral objects passed as arguments.

spct_CCT()
Correlated color temperature
spct_CRI()
Color reproduction index
spct_SSI()
Spectral (color) similarity index

Data from loggers

Read data files with data from loggers into data frames.

read_csi_dat()
Read '.DAT' file(s) saved by modern Campbell Scientific loggers.
read_yoctopuce_csv()
Read '.CSV' file(s) downloaded from YoctoPuce modules.

Utilities

Tools to facilitate the use of other functions.

read_foreign2mspct()
Read multiple foreign files with spectral data