Package index • photobiologyInOut

Package overview

photobiologyInOut photobiologyInOut-package: photobiologyInOut: Read Spectral and Logged Data from Foreign Files

Spectrometer output files

Read files with data from spectrometers.

read_oo_ssirrad() read_oo_ssdata(): Read File Saved by Ocean Optics' SpectraSuite.

read_oo_jazirrad() read_oo_jazpc() read_oo_jazdata(): Read Files Saved by Ocean Optics' Jaz spectrometer.

read_oo_pidata(): Read File Saved by Ocean Optics' Raspberry Pi software.

read_oo_ovirrad(): Read File Saved by Ocean Optics' OceanView.

read_avaspec_csv() read_avaspec_xls(): Read '.csv' File Saved by Avantes' Software for AvaSpec.

read_macam_dta(): Read '.DTA' File Saved by Macam's Software.

read_licor_prn() read_m_licor_prn(): Read '.PRN' File(s) Saved by LI-COR's PC1800 Program.

read_li180_txt() read_m_li180_txt(): Read '.TXT' File(s) Saved by LI-COR's LI-180 spectroradiometer.

read_wasatch_csv(): Read File Saved by Wasatch's Enlighten.

read_spectrapen_csv(): Read '.CSV' File Saved by PSI's Software.

read_cid_spectravue_csv(): Read File Saved by CID's SpectraVue.

Spectral data from radiation transfer models

Run simulations and/or read files with data from radiation transfer models.

read_fmi_cum() read_m_fmi_cum(): Read daily cummulated solar spectrum data file(s).

read_fmi2mspct(): Read multiple solar spectra from a data file.

read_tuv_usrout() read_tuv_usrout2mspct(): Read TUV output file.

read_qtuv_txt(): Read Quick TUV output file.

qtuv_s.e.irrad() qtuv_m_s.e.irrad(): Spectral irradiance from the Quick TUV calculator

qtuv_clouds(): Clouds descriptor

read_uvspec_disort(): Read libRadtran's uvspec output file.

read_uvspec_disort_vesa(): Read libRadtran's uvspec output file from batch job.

Spectral data from public repositories

Read files with data downloaded from public repositories.

read_FReD_csv(): Read '.CSV' FReD database.

read_ASTER_txt(): Read File downloaded from ASTER data base.

read_CIE_csv(): Read '.CSV' files from CIE

Spectral data to and from other R packages

Read and write to objects belonging to classes defined in other R packages.

hyperSpec2mspct() hyperSpec2spct() mspct2hyperSpec() spct2hyperSpec(): Convert 'hyperSpec::hyperSpec' objects

colorSpec2mspct() as.source_spct(<colorSpec>) as.source_mspct(<colorSpec>) as.response_spct(<colorSpec>) as.response_mspct(<colorSpec>) as.filter_spct(<colorSpec>) as.filter_mspct(<colorSpec>) as.reflector_spct(<colorSpec>) as.reflector_mspct(<colorSpec>) as.chroma_mspct(<colorSpec>) colorSpec2spct() colorSpec2chroma_spct() as.chroma_spct(<colorSpec>) as.generic_spct(<colorSpec>) as.generic_mspct(<colorSpec>): Convert 'colorSpec::colorSpec' objects

rspec2mspct() rspec2spct(): Convert "pavo::rspec" objects

mspct2colorSpec() spct2colorSpec() chroma_spct2colorSpec() as.colorSpec(<generic_mspct>) as.colorSpec(<generic_spct>) as.colorSpec(<chroma_spct>): Convert into 'colorSpec::colorSpec' objects

mspct2fdata() spct2fdata() fdata2spct() fdata2mspct(): Convert spectra into 'fda.usc::fdata' objects

Wrappers on functions from other R packages

Call functions from package ‘colorSpec’ with on-the-fly conversion of spectral objects passed as arguments.

spct_CCT(): Correlated color temperature

spct_CRI(): Color reproduction index

spct_SSI(): Spectral (color) similarity index

Data from loggers

Read data files with data from loggers into data frames.

read_csi_dat(): Read '.DAT' file(s) saved by modern Campbell Scientific loggers.

read_yoctopuce_csv(): Read '.CSV' file(s) downloaded from YoctoPuce modules.

Utilities

Tools to facilitate the use of other functions.

read_foreign2mspct(): Read multiple foreign files with spectral data