Spectral irradiance y-scale

Scale y continuous with defaults suitable for raw detector counts.

Usage

scale_y_s.e.irrad_continuous(
  unit.exponent = 0,
  name = s.e.irrad_label(unit.exponent = unit.exponent, markup.format = markup.format,
    time.unit = "second", label.text = label.text, pc.out = pc.out, scaled = scaled,
    normalized = normalized, axis.symbols = axis.symbols),
  labels = SI_pl_format(exponent = unit.exponent - pc.out * 2),
  markup.format = getOption("photobiology.math", default = "R.expression"),
  label.text = axis_labels(append = ifelse(axis.symbols, ",", ""))[["s.e.irrad"]],
  pc.out = FALSE,
  scaled = FALSE,
  normalised = FALSE,
  normalized = normalised,
  axis.symbols = getOption("ggspectra.axis.symbols", default = TRUE),
  ...
)

scale_y_s.q.irrad_continuous(
  unit.exponent = -6,
  name = s.q.irrad_label(unit.exponent = unit.exponent, markup.format = markup.format,
    time.unit = "second", label.text = label.text, pc.out = pc.out, scaled = scaled,
    normalized = normalized, axis.symbols = axis.symbols),
  labels = SI_pl_format(exponent = unit.exponent - pc.out * 2),
  markup.format = getOption("photobiology.math", default = "R.expression"),
  label.text = axis_labels(append = ifelse(axis.symbols, ",", ""))[["s.q.irrad"]],
  pc.out = FALSE,
  scaled = FALSE,
  normalised = FALSE,
  normalized = normalised,
  axis.symbols = getOption("ggspectra.axis.symbols", default = TRUE),
  ...
)

scale_y_s.e.irrad_log10(
  unit.exponent = 0,
  name = s.e.irrad_label(unit.exponent = unit.exponent, markup.format = markup.format,
    time.unit = "second", label.text = label.text, pc.out = pc.out, scaled = scaled,
    normalized = normalized, axis.symbols = axis.symbols),
  labels = SI_pl_format(exponent = unit.exponent - pc.out * 2),
  markup.format = getOption("photobiology.math", default = "R.expression"),
  label.text = axis_labels(append = ifelse(axis.symbols, ",", ""))[["s.e.irrad"]],
  pc.out = FALSE,
  scaled = FALSE,
  normalised = FALSE,
  normalized = normalised,
  axis.symbols = getOption("ggspectra.axis.symbols", default = TRUE),
  ...
)

scale_y_s.q.irrad_log10(
  unit.exponent = -6,
  name = s.q.irrad_label(unit.exponent = unit.exponent, markup.format = markup.format,
    time.unit = "second", label.text = label.text, pc.out = pc.out, scaled = scaled,
    normalized = normalized, axis.symbols = axis.symbols),
  labels = SI_pl_format(exponent = unit.exponent - pc.out * 2),
  markup.format = getOption("photobiology.math", default = "R.expression"),
  label.text = axis_labels(append = ifelse(axis.symbols, ",", ""))[["s.q.irrad"]],
  pc.out = FALSE,
  scaled = FALSE,
  normalised = FALSE,
  normalized = normalised,
  axis.symbols = getOption("ggspectra.axis.symbols", default = TRUE),
  ...
)

Arguments

unit.exponent

integer

name

The name of the scale, used for the axis-label.

labels

The tick labels or a function to generate them.

markup.format

character string, "R", "R.expression", "r.character", or "LaTeX".

label.text

character Textual portion of the labels.

pc.out

logical, if TRUE use percent instead of fraction of one for normalized spectral data.

scaled

logical If TRUE relative units are assumed.

normalized, normalised

logical (FALSE) or numeric Normalization wavelength in manometers (nm).

axis.symbols

logical If TRUE symbols of the quantities are added to the default name.

...

other named arguments passed to scale_y_continuous

Note

This function only alters two default arguments, please, see documentation for scale_continuous

Examples

ggplot(sun.spct, unit.out = "energy") +
  geom_line() +
  scale_y_s.e.irrad_continuous() +
  scale_x_wl_continuous()


ggplot(sun.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(unit.exponent = -3) +
  scale_x_wl_continuous()


ggplot(fscale(sun.spct)) +
  geom_line() +
  scale_y_s.e.irrad_continuous(scaled = TRUE) +
  scale_x_wl_continuous()


ggplot(normalize(sun.spct, norm = "max")) +
  geom_line() +
  scale_y_s.e.irrad_continuous(normalized = "max") +
  scale_x_wl_continuous()


my.spct <- normalize(q2e(sun.spct, action = "replace"), norm = "max")
ggplot(my.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(normalized = normalization(my.spct)$norm.type,
                               pc.out = TRUE) +
  scale_x_wl_continuous()


ggplot(my.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(normalized = normalization(my.spct)$norm.wl,
                               pc.out = TRUE) +
  scale_x_wl_continuous()


ggplot(sun.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(axis.symbols = FALSE) +
  scale_x_wl_continuous()


ggplot(sun.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(label.text = "") +
  scale_x_wl_continuous()


ggplot(sun.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(label.text = "Irradiancia espectral,") +
  scale_x_wl_continuous(label.text = "Longitud de onda,")


ggplot(sun.spct) +
  geom_line() +
  scale_y_s.e.irrad_continuous(unit.exponent = -1) +
  scale_x_wl_continuous()


ggplot(sun.spct, unit.out = "photon") +
  geom_line() +
  scale_y_s.q.irrad_continuous() +
  scale_x_wl_continuous()


ggplot(clip_wl(sun.spct, c(295, NA))) +
  geom_line() +
  scale_y_s.e.irrad_log10() +
  scale_x_wl_continuous()


ggplot(clip_wl(sun.spct, c(295, NA)),
  unit.out = "photon") +
  geom_line(na.rm = TRUE) +
  scale_y_s.q.irrad_log10() +
  scale_x_wl_continuous()