Skip to contents

Pr Sigma as a function of wavelength, calculated by interpolation from data for Type I Phytochrome as compiled by Mancinelli (1994).

Usage

Phy_Sigma_R(w.length, use.cached.mult = FALSE)

Arguments

w.length

numeric array of wavelength (nm)

use.cached.mult

logical ignored

Value

a numeric array with values for Sigma

References

Mancinelli, A.L. (1994) The physiology of phytochrome action. In Photomorphogenesis in plants, 2nd edition. R.E. Kendrick and G.H.M. Kronenberg, eds. Kluwer Academic Publishers, Dordrecht, pp. 211-269. ISBN 978-0-7923-2551-2 (print), 978-94-011-1884-2 (on-line). doi:10.1007/978-94-011-1884-2_10

Examples

with(sun.data, Phy_Sigma_R(w.length))
#>   [1]         NA         NA         NA         NA         NA         NA
#>   [7]         NA 1404.00000 1338.56104 1276.89243 1218.88437 1164.42705
#>  [13] 1113.41068 1065.72545 1021.26157  979.90923  941.55864  906.10000
#>  [19]  873.41479  843.34963  815.74245  790.43115  767.25364  746.04785
#>  [25]  726.65167  708.90303  692.63984  677.70000  663.96501  651.49064
#>  [31]  640.37624  630.72116  622.62475  616.18637  611.50535  608.68105
#>  [37]  607.81281  609.00000  612.30988  617.68141  625.02149  634.23701
#>  [43]  645.23484  657.92189  672.20505  687.99119  705.18721  723.70000
#>  [49]  743.45688  764.46691  786.75959  810.36442  835.31087  861.62846
#>  [55]  889.34667  918.49500  949.10295  981.20000 1014.72610 1049.26293
#>  [61] 1084.30263 1119.33733 1153.85917 1187.36027 1219.33277 1249.26881
#>  [67] 1276.66051 1301.00000 1321.93763 1339.75657 1354.89818 1367.80385
#>  [73] 1378.91495 1388.67285 1397.51893 1405.89457 1414.24113 1423.00000
#>  [79] 1432.47418 1442.41321 1452.42825 1462.13047 1471.13104 1479.04113
#>  [85] 1485.47190 1490.03453 1492.34017 1492.00000 1488.67765 1482.24661
#>  [91] 1472.63283 1459.76227 1443.56089 1423.95463 1400.86946 1374.23133
#>  [97] 1343.96619 1310.00000 1272.35373 1231.42837 1187.71994 1141.72445
#> [103] 1093.93792 1044.85635  994.97576  944.79217  894.80158  845.50000
#> [109]  797.33785  750.58313  705.45822  662.18553  620.98745  582.08637
#> [115]  545.70469  512.06480  481.38911  453.90000  429.72877  408.64233
#> [121]  390.31648  374.42704  360.64980  348.66058  338.13518  328.74941
#> [127]  320.17908  312.10000  304.24256  296.55555  289.04235  281.70633
#> [133]  274.55086  267.57932  260.79509  254.20154  247.80205  241.60000
#> [139]  235.59628  229.78185  224.14522  218.67486  213.35927  208.18695
#> [145]  203.14636  198.22602  193.41440  188.70000  184.07343  179.53384
#> [151]  175.08248  170.72063  166.44954  162.27050  158.18475  154.19358
#> [157]  150.29824  146.50000  142.80069  139.20440  135.71576  132.33943
#> [163]  129.08005  125.94226  122.93072  120.05006  117.30494  114.70000
#> [169]  112.23658  109.90282  107.68354  105.56358  103.52777  101.56094
#> [175]   99.64791   97.77353   95.92261   94.08000   92.23455   90.39122
#> [181]   88.55900   86.74689   84.96388   83.21896   81.52112   79.87935
#> [187]   78.30265   76.80000   75.37927   74.04376   72.79567   71.63718
#> [193]   70.57047   69.59772   68.72111   67.94283   67.26507   66.69000
#> [199]   66.21986   65.85709   65.60420   65.46367   65.43801   65.52970
#> [205]   65.74125   66.07515   66.53390   67.12000   67.83466   68.67402
#> [211]   69.63292   70.70621   71.88876   73.17540   74.56099   76.04039
#> [217]   77.60844   79.26000   80.99168   82.80715   84.71186   86.71123
#> [223]   88.81071   91.01574   93.33174   95.76416   98.31843  101.00000
#> [229]  103.81468  106.76985  109.87327  113.13270  116.55589  120.15062
#> [235]  123.92463  127.88569  132.04156  136.40000  140.97104  145.77376
#> [241]  150.82955  156.15974  161.78572  167.72884  174.01047  180.65196
#> [247]  187.67468  195.10000  202.94057  211.17429  219.77035  228.69793
#> [253]  237.92622  247.42441  257.16170  267.10726  277.23030  287.50000
#> [259]  297.89286  308.41466  319.07846  329.89735  340.88441  352.05272
#> [265]  363.41535  374.98539  386.77591  398.80000  411.07747  423.65507
#> [271]  436.58631  449.92466  463.72364  478.03672  492.91740  508.41918
#> [277]  524.59555  541.50000  559.18227  577.67705  597.01531  617.22799
#> [283]  638.34604  660.40040  683.42203  707.44188  732.49088  758.60000
#> [289]  785.79937  814.11592  843.57575  874.20497  906.02971  939.07607
#> [295]  973.37017 1008.93811 1045.80602 1084.00000 1123.50955 1164.17768
#> [301] 1205.81081 1248.21532 1291.19762 1334.56411 1378.12120 1421.67527
#> [307] 1465.03274 1508.00000 1550.37983 1591.96055 1632.52682 1671.86335
#> [313] 1709.75480 1745.98587 1780.34124 1812.60560 1842.56362 1870.00000
#> [319] 1894.81011 1917.33212 1938.01490 1957.30729 1975.65818 1993.51640
#> [325] 2011.33084 2029.55034 2048.62377 2069.00000 2091.08771 2115.13495
#> [331] 2141.34958 2169.93948 2201.11250 2235.07652 2272.03941 2312.20904
#> [337] 2355.79328 2403.00000 2453.97903 2508.64806 2566.86677 2628.49480
#> [343] 2693.39183 2761.41751 2832.43151 2906.29348 2982.86309 3062.00000
#> [349] 3143.57517 3227.50479 3313.71634 3402.13731 3492.69518 3585.31743
#> [355] 3679.93155 3776.46503 3874.84535 3975.00000 4076.76128 4179.58076
#> [361] 4282.81486 4385.81996 4487.95247 4588.56877 4687.02528 4782.67839
#> [367] 4874.88450 4963.00000 5046.11857 5122.28298 5189.27329 5244.86952
#> [373] 5286.85175 5313.00000 5321.33098 5310.80801 5280.63103 5230.00000
#> [379] 5158.46218 5066.95398 4956.75912 4829.16130 4685.44423 4526.89163
#> [385] 4354.78719 4170.41463 3975.05767 3770.00000 3556.70404 3337.34699
#> [391] 3114.28476 2889.87326 2666.46837 2446.42602 2232.10210 2025.85253
#> [397] 1830.03319 1647.00000 1478.58646 1324.53644 1184.07142 1056.41287
#> [403]  940.78227  836.40108  742.49079  658.27287  582.96878  515.80000
#> [409]  456.02793  403.07365  356.39816  315.46245  279.72755  248.65444
#> [415]  221.70413  198.33761  178.01590  160.20000  144.41507  130.44297
#> [421]  118.12971  107.32131   97.86379   89.60316   82.38546   76.05668
#> [427]   70.46286   65.45000   60.88626   56.72832   52.95497   49.54503
#> [433]   46.47730   43.73058   41.28369   39.11543   37.20459   35.53000
#> [439]   34.06997   32.80088   31.69863   30.73913   29.89826   29.15194
#> [445]   28.47605   27.84650   27.23918   26.63000   26.00011   25.35169
#> [451]   24.69218   24.02902   23.36965   22.72151   22.09203   21.48866
#> [457]   20.91884   20.39000   19.90747   19.46813   19.06674   18.69807
#> [463]   18.35689   18.03795   17.73603   17.44588   17.16229   16.88000
#> [469]   16.59421   16.30180   16.00006   15.68629   15.35781   15.01189
#> [475]   14.64586   14.25700   13.84261   13.40000         NA         NA
#> [481]         NA         NA         NA         NA         NA         NA
#> [487]         NA         NA         NA         NA         NA         NA
#> [493]         NA         NA         NA         NA         NA         NA
#> [499]         NA         NA         NA         NA         NA         NA
#> [505]         NA         NA         NA         NA
with(sun.data, Phy_Sigma_R(w.length, TRUE))
#>   [1]         NA         NA         NA         NA         NA         NA
#>   [7]         NA 1404.00000 1338.56104 1276.89243 1218.88437 1164.42705
#>  [13] 1113.41068 1065.72545 1021.26157  979.90923  941.55864  906.10000
#>  [19]  873.41479  843.34963  815.74245  790.43115  767.25364  746.04785
#>  [25]  726.65167  708.90303  692.63984  677.70000  663.96501  651.49064
#>  [31]  640.37624  630.72116  622.62475  616.18637  611.50535  608.68105
#>  [37]  607.81281  609.00000  612.30988  617.68141  625.02149  634.23701
#>  [43]  645.23484  657.92189  672.20505  687.99119  705.18721  723.70000
#>  [49]  743.45688  764.46691  786.75959  810.36442  835.31087  861.62846
#>  [55]  889.34667  918.49500  949.10295  981.20000 1014.72610 1049.26293
#>  [61] 1084.30263 1119.33733 1153.85917 1187.36027 1219.33277 1249.26881
#>  [67] 1276.66051 1301.00000 1321.93763 1339.75657 1354.89818 1367.80385
#>  [73] 1378.91495 1388.67285 1397.51893 1405.89457 1414.24113 1423.00000
#>  [79] 1432.47418 1442.41321 1452.42825 1462.13047 1471.13104 1479.04113
#>  [85] 1485.47190 1490.03453 1492.34017 1492.00000 1488.67765 1482.24661
#>  [91] 1472.63283 1459.76227 1443.56089 1423.95463 1400.86946 1374.23133
#>  [97] 1343.96619 1310.00000 1272.35373 1231.42837 1187.71994 1141.72445
#> [103] 1093.93792 1044.85635  994.97576  944.79217  894.80158  845.50000
#> [109]  797.33785  750.58313  705.45822  662.18553  620.98745  582.08637
#> [115]  545.70469  512.06480  481.38911  453.90000  429.72877  408.64233
#> [121]  390.31648  374.42704  360.64980  348.66058  338.13518  328.74941
#> [127]  320.17908  312.10000  304.24256  296.55555  289.04235  281.70633
#> [133]  274.55086  267.57932  260.79509  254.20154  247.80205  241.60000
#> [139]  235.59628  229.78185  224.14522  218.67486  213.35927  208.18695
#> [145]  203.14636  198.22602  193.41440  188.70000  184.07343  179.53384
#> [151]  175.08248  170.72063  166.44954  162.27050  158.18475  154.19358
#> [157]  150.29824  146.50000  142.80069  139.20440  135.71576  132.33943
#> [163]  129.08005  125.94226  122.93072  120.05006  117.30494  114.70000
#> [169]  112.23658  109.90282  107.68354  105.56358  103.52777  101.56094
#> [175]   99.64791   97.77353   95.92261   94.08000   92.23455   90.39122
#> [181]   88.55900   86.74689   84.96388   83.21896   81.52112   79.87935
#> [187]   78.30265   76.80000   75.37927   74.04376   72.79567   71.63718
#> [193]   70.57047   69.59772   68.72111   67.94283   67.26507   66.69000
#> [199]   66.21986   65.85709   65.60420   65.46367   65.43801   65.52970
#> [205]   65.74125   66.07515   66.53390   67.12000   67.83466   68.67402
#> [211]   69.63292   70.70621   71.88876   73.17540   74.56099   76.04039
#> [217]   77.60844   79.26000   80.99168   82.80715   84.71186   86.71123
#> [223]   88.81071   91.01574   93.33174   95.76416   98.31843  101.00000
#> [229]  103.81468  106.76985  109.87327  113.13270  116.55589  120.15062
#> [235]  123.92463  127.88569  132.04156  136.40000  140.97104  145.77376
#> [241]  150.82955  156.15974  161.78572  167.72884  174.01047  180.65196
#> [247]  187.67468  195.10000  202.94057  211.17429  219.77035  228.69793
#> [253]  237.92622  247.42441  257.16170  267.10726  277.23030  287.50000
#> [259]  297.89286  308.41466  319.07846  329.89735  340.88441  352.05272
#> [265]  363.41535  374.98539  386.77591  398.80000  411.07747  423.65507
#> [271]  436.58631  449.92466  463.72364  478.03672  492.91740  508.41918
#> [277]  524.59555  541.50000  559.18227  577.67705  597.01531  617.22799
#> [283]  638.34604  660.40040  683.42203  707.44188  732.49088  758.60000
#> [289]  785.79937  814.11592  843.57575  874.20497  906.02971  939.07607
#> [295]  973.37017 1008.93811 1045.80602 1084.00000 1123.50955 1164.17768
#> [301] 1205.81081 1248.21532 1291.19762 1334.56411 1378.12120 1421.67527
#> [307] 1465.03274 1508.00000 1550.37983 1591.96055 1632.52682 1671.86335
#> [313] 1709.75480 1745.98587 1780.34124 1812.60560 1842.56362 1870.00000
#> [319] 1894.81011 1917.33212 1938.01490 1957.30729 1975.65818 1993.51640
#> [325] 2011.33084 2029.55034 2048.62377 2069.00000 2091.08771 2115.13495
#> [331] 2141.34958 2169.93948 2201.11250 2235.07652 2272.03941 2312.20904
#> [337] 2355.79328 2403.00000 2453.97903 2508.64806 2566.86677 2628.49480
#> [343] 2693.39183 2761.41751 2832.43151 2906.29348 2982.86309 3062.00000
#> [349] 3143.57517 3227.50479 3313.71634 3402.13731 3492.69518 3585.31743
#> [355] 3679.93155 3776.46503 3874.84535 3975.00000 4076.76128 4179.58076
#> [361] 4282.81486 4385.81996 4487.95247 4588.56877 4687.02528 4782.67839
#> [367] 4874.88450 4963.00000 5046.11857 5122.28298 5189.27329 5244.86952
#> [373] 5286.85175 5313.00000 5321.33098 5310.80801 5280.63103 5230.00000
#> [379] 5158.46218 5066.95398 4956.75912 4829.16130 4685.44423 4526.89163
#> [385] 4354.78719 4170.41463 3975.05767 3770.00000 3556.70404 3337.34699
#> [391] 3114.28476 2889.87326 2666.46837 2446.42602 2232.10210 2025.85253
#> [397] 1830.03319 1647.00000 1478.58646 1324.53644 1184.07142 1056.41287
#> [403]  940.78227  836.40108  742.49079  658.27287  582.96878  515.80000
#> [409]  456.02793  403.07365  356.39816  315.46245  279.72755  248.65444
#> [415]  221.70413  198.33761  178.01590  160.20000  144.41507  130.44297
#> [421]  118.12971  107.32131   97.86379   89.60316   82.38546   76.05668
#> [427]   70.46286   65.45000   60.88626   56.72832   52.95497   49.54503
#> [433]   46.47730   43.73058   41.28369   39.11543   37.20459   35.53000
#> [439]   34.06997   32.80088   31.69863   30.73913   29.89826   29.15194
#> [445]   28.47605   27.84650   27.23918   26.63000   26.00011   25.35169
#> [451]   24.69218   24.02902   23.36965   22.72151   22.09203   21.48866
#> [457]   20.91884   20.39000   19.90747   19.46813   19.06674   18.69807
#> [463]   18.35689   18.03795   17.73603   17.44588   17.16229   16.88000
#> [469]   16.59421   16.30180   16.00006   15.68629   15.35781   15.01189
#> [475]   14.64586   14.25700   13.84261   13.40000         NA         NA
#> [481]         NA         NA         NA         NA         NA         NA
#> [487]         NA         NA         NA         NA         NA         NA
#> [493]         NA         NA         NA         NA         NA         NA
#> [499]         NA         NA         NA         NA         NA         NA
#> [505]         NA         NA         NA         NA